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_|*|_|*|_|*|_|*|_|*|_|*|_|*|_|*| |       knownSP        |  secis_index:1     SeB_exonerate category:ALI_U |*|_|*|_|*|_|*|_|*|_|*|_|*|_|*|_
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 Blastx evalue: 9e-22
 Query name: gi|302058272|ref|NP_001180454.1| redox-regulatory protein FAM213A [Danio rerio] >gi|308154346|sp|Q6PBP3.2|F213A_DANRE RecName: Full=Redox-regulatory protein FAM213A; AltName: Full=Peroxiredoxin-like 2 activated in M-CSF stimulated monocytes; Short=Protein PAMM [Danio rerio]
 Query range: 51-211  (total 212)

 Target: /data/www-rg/seblastian_results/100027113/tempfiles/temptarget.fasta
 Chromosome: your_sequence Strand: +
 Positions:
 -Exon 1  2362         2448
 -Exon 2  3341         3481
 -Exon 3  3669         3833
 -Exon 4  3939         4028

 Redox box: YES

Query   RSLKAKALWEKSGAVIMAVRRPGUFLCRE <---Intron---> EASELSSLKPQLDELGVPLYAVVKENVGTEIQDFRPHFAGEIFLDEK <---Int
        //|| / |||||||||||||||||||||| <   892bp    > ||/||||||||||||||||||||||/||||/|/|||/| ||/||||| <   187
Target  KTLKGRTLWEKSGAVIMAVRRPGUFLCRE                EAAELSSLKPQLDELGVPLYAVVKEDVGTEVQNFRPYFKGEVFLDEK        
        aatagaactgatgggaaggcccgttttag                ggggcttcacccggcggcctgggaggggaggcatacttagggttgga        
        actaggctgaacgctttctggcggttgga                accatcctacataatgtctacttaaatgcataatgcatagatttaaa        
        gtgacgtggggtatccgatggtaatgcag                gtaggctgacggtgcgctgttggggccccgcgccagccgggccgtag        
                               *                                                                            

Query   ron---> QAFYGPQQRKMGGLGFIRLGVWQNFVRAWRAGYQGNMNGEGFILGGVFVMGSGGQ <---Intron---> GVLLEHREKEFGDKVSLESVL
        bp    > / ||||//|||| | |/|/||| | /||// |/ ||/ ||||/||||||/| | | <   105bp    > |/|||||| ||||||//| |/
Target          RRFYGPRERKMGLLAFLRVGVWLNGLRAFKNGFMGNVLGEGFVLGGVFVIGRGQQ                GILLEHREIEFGDKVNIEDVI
                acttgccgcaagccgtccgggttagcagtaagtagagtgggtgcgggtgagcgcc                gaccgcagagtggagaaggga
                ggtagcgagatgttcttgtgtgtagtgctaagttgattgagtttggttttgggaa                gtttaagatatgaatataatt
                gtttgctgtggccggctttggggttggccgtccgattgagctcctgccctgaagg                aagggcagtgtataaccattc
                                                                                                            

Query   EAAKKVVVE
         ||///  |
Target  RAARRIPQE
        cggaaaccg
        gccggtcaa
        atcagaaga
                 
 Sequence until next stop: 
CTTCTTCCTCTGGAAAACAAATAA
 L  L  P  L  E  N  K  * 

 Distance CDS-SECIS: 333 ; UGA-SECIS: 744

------- SECIS element -- id:1 -- grade:A ----
 Chromosome = your_sequence Strand = + Positions = 4362 - 4431
 Found by:  Infernal (score=40.45) Covels (score=32.06)
 Stem2 length = 10   Apical loop length = 12   Insertion in stem2 = 0, 0
 Free Energy = -24.0

         ..(((((((.......(((((((((((((((...............)))))))))))))))........)))))))..
 model   uucggucaugcgUuaAUGAcGgccuggcccuAAAcCcuuuuuggggcgggccaggcCuGAUGuuuuuucaugaccggc
         .((((((((.--....{[[{((((((({(((.....---.......)))})))))))}]]}..--..-.)))))))).
 target  UCUGAGUGUG--UUAAUGAUGGUCUGCCUUUAAACU---CAUCAGAGGAAGCAGACCUGAUCU--CU-AACACUCAGU
                         ****           ^^^                       ****